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Comparison of saliva and oro-nasopharyngeal swab sample in the molecular diagnosis of COVID-19.

Identifieur interne : 000721 ( Main/Exploration ); précédent : 000720; suivant : 000722

Comparison of saliva and oro-nasopharyngeal swab sample in the molecular diagnosis of COVID-19.

Auteurs : Ertu Rul Güçlü [Turquie] ; Mehmet Koroglu [Turquie] ; Yusuf Yürümez [Turquie] ; Hande Toptan [Turquie] ; Elif Kose [Turquie] ; Fatih Güneysu [Turquie] ; O Uz Karabay [Turquie]

Source :

RBID : pubmed:32935807

Descripteurs français

English descriptors

Abstract

BACKGROUND

Healthcare personnel are at risk of becoming infected while taking upper and/or lower respiratory tract specimens. Therefore, there is a need for sampling methods that do not risk infecting them. In this study, we aimed to compare the saliva and Oro-Nasopharyngeal Swab (ONS) sampling methods.

METHODS

Patients were divided into three groups. Group 1 included patients whose diagnosis of COVID-19 was confirmed by polymerase chain reaction (PCR). Group 2 included patients with COVID-19 compatible findings in lung computed tomography (CT), but with a negative PCR. Group 3 included patients who presented to the emergency department with COVID-19 compatible complaints but had normal CT. Saliva and ONS samples were taken on the third day of hospitalization in groups 1 and 2, whereas in group 3, they were taken at the time of admission to the hospital.

RESULTS

A total of 64 patients were included in the study. The average age was 51.04 ± 17.9 years, and 37 (57.8%) were male. SARS-CoV-2 was detected in 27 (42.2%) patients' saliva samples. While the sensitivity and positive predictive value of saliva samples were 85.2%, specificity and negative predictive value were 89.2%. The value of kappa was in substantial agreement (0.744), and it was found statistically significant (<0.001).

CONCLUSIONS

Saliva samples can be used instead of ONS samples in detecting SARS-CoV-2. Investigating SARS-CoV-2 with saliva is cheaper, easier for the patient and overall, and, most importantly, it poses much less risk of SARS-CoV-2 contamination to healthcare personnel.


DOI: 10.1590/1806-9282.66.8.1116
PubMed: 32935807


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

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<term>Coronavirus Infections (diagnosis)</term>
<term>Humans (MeSH)</term>
<term>Male (MeSH)</term>
<term>Middle Aged (MeSH)</term>
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<term>Infections à coronavirus (diagnostic)</term>
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<p>
<b>BACKGROUND</b>
</p>
<p>Healthcare personnel are at risk of becoming infected while taking upper and/or lower respiratory tract specimens. Therefore, there is a need for sampling methods that do not risk infecting them. In this study, we aimed to compare the saliva and Oro-Nasopharyngeal Swab (ONS) sampling methods.</p>
</div>
<div type="abstract" xml:lang="en">
<p>
<b>METHODS</b>
</p>
<p>Patients were divided into three groups. Group 1 included patients whose diagnosis of COVID-19 was confirmed by polymerase chain reaction (PCR). Group 2 included patients with COVID-19 compatible findings in lung computed tomography (CT), but with a negative PCR. Group 3 included patients who presented to the emergency department with COVID-19 compatible complaints but had normal CT. Saliva and ONS samples were taken on the third day of hospitalization in groups 1 and 2, whereas in group 3, they were taken at the time of admission to the hospital.</p>
</div>
<div type="abstract" xml:lang="en">
<p>
<b>RESULTS</b>
</p>
<p>A total of 64 patients were included in the study. The average age was 51.04 ± 17.9 years, and 37 (57.8%) were male. SARS-CoV-2 was detected in 27 (42.2%) patients' saliva samples. While the sensitivity and positive predictive value of saliva samples were 85.2%, specificity and negative predictive value were 89.2%. The value of kappa was in substantial agreement (0.744), and it was found statistically significant (<0.001).</p>
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<div type="abstract" xml:lang="en">
<p>
<b>CONCLUSIONS</b>
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<p>Saliva samples can be used instead of ONS samples in detecting SARS-CoV-2. Investigating SARS-CoV-2 with saliva is cheaper, easier for the patient and overall, and, most importantly, it poses much less risk of SARS-CoV-2 contamination to healthcare personnel.</p>
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<AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Healthcare personnel are at risk of becoming infected while taking upper and/or lower respiratory tract specimens. Therefore, there is a need for sampling methods that do not risk infecting them. In this study, we aimed to compare the saliva and Oro-Nasopharyngeal Swab (ONS) sampling methods.</AbstractText>
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</list>
<tree>
<country name="Turquie">
<noRegion>
<name sortKey="Guclu, Ertu Rul" sort="Guclu, Ertu Rul" uniqKey="Guclu E" first="Ertu Rul" last="Güçlü">Ertu Rul Güçlü</name>
</noRegion>
<name sortKey="Guneysu, Fatih" sort="Guneysu, Fatih" uniqKey="Guneysu F" first="Fatih" last="Güneysu">Fatih Güneysu</name>
<name sortKey="Karabay, O Uz" sort="Karabay, O Uz" uniqKey="Karabay O" first="O Uz" last="Karabay">O Uz Karabay</name>
<name sortKey="Koroglu, Mehmet" sort="Koroglu, Mehmet" uniqKey="Koroglu M" first="Mehmet" last="Koroglu">Mehmet Koroglu</name>
<name sortKey="Kose, Elif" sort="Kose, Elif" uniqKey="Kose E" first="Elif" last="Kose">Elif Kose</name>
<name sortKey="Toptan, Hande" sort="Toptan, Hande" uniqKey="Toptan H" first="Hande" last="Toptan">Hande Toptan</name>
<name sortKey="Yurumez, Yusuf" sort="Yurumez, Yusuf" uniqKey="Yurumez Y" first="Yusuf" last="Yürümez">Yusuf Yürümez</name>
</country>
</tree>
</affiliations>
</record>

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Data generation: Thu Oct 15 09:49:45 2020. Site generation: Wed Jan 27 17:10:23 2021